| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | ACER | Hard coral |
| Agaricia fragilis | AFRA | Hard coral |
| Agaricia | AGAR | Hard coral |
| Agaricia grahamae | AGRA | Hard coral |
| Agaricia lamarcki | ALAM | Hard coral |
| Acropora palmata | APAL | Hard coral |
| Acropora prolifera | APRO | Hard coral |
| Agaricia tenuifolia | ATEN | Hard coral |
| Agaricia undata | AUND | Hard coral |
| Colpophyllia natans | CNAT | Hard coral |
| Unknown Hard Coral | CORALU | Hard coral |
| Coral Juvenile | CORJU | Hard coral |
| Diseased Coral | DCOR | Hard coral |
| Dendrogyra cylindrus | DCYL | Hard coral |
| Diploria labyrinthiformis | DLAB | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FFRA | Hard coral |
| Helioseris cucullata | HCUC | Hard coral |
| Isophyllia rigida | IRIG | Hard coral |
| Isophyllia sinuosa | ISIN | Hard coral |
| Madracis | MADR | Hard coral |
| Mycetophyllia aliciae | MALI | Hard coral |
| Mussa angulosa | MANG | Hard coral |
| Manicina areolata | MARE | Hard coral |
| Madracis auretenra | MAUR | Hard coral |
| Montastrea cavernosa | MCAV | Hard coral |
| Madracis decactis | MDEC | Hard coral |
| Meandrina | MEAN | Hard coral |
| Mycetophyllia ferox | MFER | Hard coral |
| Madracis formosa | MFOR | Hard coral |
| Meandrina jacksoni | MJAC | Hard coral |
| Mycetophyllia lamarckana | MLAM | Hard coral |
| Meandrina meandrites | MMEA | Hard coral |
| Madracis pharensis | MPHA | Hard coral |
| Madracis senaria | MSEN | Hard coral |
| Mycetophyllia | MYCE | Hard coral |
| Orbicella annularis | OANN | Hard coral |
| Oculina | OCUL | Hard coral |
| Oculina diffusa | ODIF | Hard coral |
| Orbicella faveolata | OFAV | Hard coral |
| Orbicella franksi | OFRA | Hard coral |
| Orbicella | ORBI | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Porites branneri | PBRA | Hard coral |
| Pseudodiploria clivosa | PCLI | Hard coral |
| Porites divaricata | PDIV | Hard coral |
| Porites furcata | PFUR | Hard coral |
| Porites | PORI | Hard coral |
| Porites porites | PPOR | Hard coral |
| Pseudodiploria | PSEU | Hard coral |
| Pseudodiploria strigosa | PSTR | Hard coral |
| Solenastrea bournoni | SBOU | Hard coral |
| Scolymia | SCOL | Hard coral |
| Scolymia cubensis | SCUB | Hard coral |
| Solenastrea hyades | SHYA | Hard coral |
| Siderastrea | SIDE | Hard coral |
| Stephanocoenia intersepta | SINT | Hard coral |
| Scolymia lacera | SLAC | Hard coral |
| Solenastrea | SOLE | Hard coral |
| Siderastrea radians | SRAD | Hard coral |
| Stylaster roseus | SROS | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Agaricia agaricites | UAGA | Hard coral |
| Agaricia humilis | UHUM | Hard coral |
| Anemone | ANEM | Other Invertebrates |
| Antipatharia | ANTI | Other Invertebrates |
| Ball Sponge | BALL | Other Invertebrates |
| Briareum asbestinum | BASB | Other Invertebrates |
| Barrel Sponge | BASP | Other Invertebrates |
| Boring sponge | BOSP | Other Invertebrates |
| Cliona spp. | CLIO | Other Invertebrates |
| Corallimorpharia | CMOR | Other Invertebrates |
| Erythropodium caribaeorum | ECAR | Other Invertebrates |
| Encrusting gorgonian | ENGO | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Sea Fan | FAN | Other Invertebrates |
| Gorgonian | GO | Other Invertebrates |
| Millepora alcicornis | MALC | Other Invertebrates |
| Millepora complanata | MCOM | Other Invertebrates |
| Millepora | MILL | Other Invertebrates |
| Millepora squarrosa | MSQU | Other Invertebrates |
| Palythoa caribaeorum | PALY | Other Invertebrates |
| Sea plumes | PLUME | Other Invertebrates |
| Rope sponge | ROPE | Other Invertebrates |
| Sponge | SPO | Other Invertebrates |
| Tube or Rod Sponge | TUBE | Other Invertebrates |
| Tunicate | TUN | Other Invertebrates |
| Vase sponge | VASE | Other Invertebrates |
| Sea whips | WHIP | Other Invertebrates |
| Worms | WORM | Other Invertebrates |
| Zoanthid | ZO | Other Invertebrates |
| Zoanthus | ZOAN | Other Invertebrates |
| Sea Rod | ROD | Soft Substrate |
| Sand | S | Soft Substrate |
| Pavement | P | Hard Substrate |
| Cyanobacteria | CYAN | Other |
| Dead coral with algae | DCA | Other |
| Equipment | EQUIP | Other |
| Other | O | Other |
| Rubble | R | Other |
| Shadow | SHADOW | Other |
| Slate | SLATE | Other |
| TAPE | TAPE | Other |
| Unknown | UNK | Other |
| Wand | WAND | Other |
| Amphiroa sp. | AMPH | Algae |
| CCA (crustose coralline algae) | CALG | Algae |
| Cladophora sp. | CLAD | Algae |
| Dictyota | DICT | Algae |
| Halimeda | HALI | Algae |
| Liagora | LIAG | Algae |
| Lobophora | LVAR | Algae |
| Macroalgae | MACA | Algae |
| Microdictyon | MICRO | Algae |
| Peyssonnelia | PEYS | Algae |
| Ramicrusta spp. | RAMI | Algae |
| Sargassum | SARG | Algae |
| Halophila stipulacea | HSTI | Seagrass |
| Halodule wrightii | HWRI | Seagrass |
| Seagrass | SEAG | Seagrass |
| Syringodium filiforme | SFIL | Seagrass |