| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Acropora prolifera | AcrPro | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia fragilis | AgFra | Hard coral |
| Agaricia grahamae | AgGra | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Agaricia undata | AgUnd | Hard coral |
| Bleached Hard Coral | B_HC | Hard coral |
| Agaricia Lamarcki - Bleached | CB-ALAM | Hard coral |
| Dichocoenia stellaris | CIS | Hard coral |
| Colpophyllia breviserialis | COB | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Coral Juvenile | Cor_juv | Hard coral |
| Dendrogyra cylindrus | DenCyl | Hard coral |
| Dichocoenia stokesi | Dicho_stok | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Diseased Coral | DISCORAL | Hard coral |
| Diploria stigosa | DS | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FaviaFrag | Hard coral |
| Hard coral | HC | Hard coral |
| Isophyllia sinuosa | IsophSin | Hard coral |
| Leptoseris cucullata | LEPCU | Hard coral |
| Manicina areolata | MAA | Hard coral |
| Madracis decactis | MadDeca | Hard coral |
| Madracis mirabilis | MAMI | Hard coral |
| Meandrina jacksoni | MEANJ | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastrea cavernosa | MoCav | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Mycetophyllia aliciae | MycetAli | Hard coral |
| Mycetophyllia danaana | MycetDan | Hard coral |
| Mycetophyllia ferox | MycetFer | Hard coral |
| Mycetophyllia lamarckana | MycetLam | Hard coral |
| Oculina diffusa | OCD | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| psuedodiploria clivosa | PCLI | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites branneri | PorBran | Hard coral |
| Porites divaricata | PorDiv | Hard coral |
| Porites furcata | PorFurc | Hard coral |
| Porites porites | PorPor | Hard coral |
| Recently killed coral | RKC | Hard coral |
| Scolymia cubensis | SCOCUB | Hard coral |
| Scolymia lacera | SCOLA | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Solenastrea hyades | SOL | Hard coral |
| Solenastrea bournoni | SOLBOU | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Tubastraea aurea | TA | Hard coral |
| Ascidian | ASCD | Other Invertebrates |
| Dead Gorgonian | DG | Other Invertebrates |
| Erythropodium | erythro | Other Invertebrates |
| Eunicea spp. | EUNSPP | Other Invertebrates |
| Gorgonian | GOR | Other Invertebrates |
| Briareum | GORG-BRI | Other Invertebrates |
| Iciligorgia spp. | ICISPP | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Millepora squarrosa | MIS | Other Invertebrates |
| Muriceopsis spp. | MURISPP | Other Invertebrates |
| Muricea spp. | MURSPP | Other Invertebrates |
| Palythoa | PALYTHO | Other Invertebrates |
| Pseudopterogorgia sp | PGorg | Other Invertebrates |
| Plexaura spp. | PLESPP | Other Invertebrates |
| Plexaurella spp. | PLEXSPP | Other Invertebrates |
| Pseudoplexaura spp. | PSESPP | Other Invertebrates |
| Pseudopterogorgia | Pseudopter | Other Invertebrates |
| Pterogorgia | Pterogorg | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Trididemnum solidum | TSOL | Other Invertebrates |
| Zoanthid | Zoanthid | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Dead coral with turf algae | TURDHC | Hard Substrate |
| Cyanobacteria | CYANOB | Other |
| Schizothrix | Cyan red | Other |
| Dead coral with algae | DeadAlg | Other |
| other disease | OD | Other |
| All other | Other | Other |
| Rubble | Rubble | Other |
| Shadow | SHAD | Other |
| TAPE | TAPE | Other |
| Unknown | Unk | Other |
| Wand | WAND | Other |
| white band disease | WBD | Other |
| Amphiroa sp. | Amphi | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Dictyota | Dictyota | Algae |
| Halimeda | Halimeda | Algae |
| Liagora | LIA | Algae |
| Lobophora | Lobophora | Algae |
| Macroalgae | MAL | Algae |
| Padina | Padina | Algae |
| Peyssonnelia | Peysson | Algae |
| Porolithon | Poro | Algae |
| Sargassum | Sargassum | Algae |
| Stypopodium sp. | Styp | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | Turf | Algae |
| Wrangelia | WRA | Algae |
| Halophila stipulacea | HalophStip | Seagrass |