| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora | Acropora | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Acropora prolifera | AcrPro | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia | Agaricia | Hard coral |
| Agaricia fragilis | AgFra | Hard coral |
| Agaricia grahamae | AgGra | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Agaricia tenuifolia | AgTen | Hard coral |
| Agaricia undata | AgUnd | Hard coral |
| Hard Coral (branching) | C_branch | Hard coral |
| Cladocora arbuscula | ClaArb | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Dendrogyra cylindrus | DenCyl | Hard coral |
| Dichocoenia stokesi | Dicho_stok | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia | fav | Hard coral |
| Favia fragum | FaviaFrag | Hard coral |
| Stylaster roseus | Fire Sros | Hard coral |
| Hard coral | HC | Hard coral |
| Hard Coral (encrusting) | HC_encr | Hard coral |
| Hard Coral (foliose) | HC_fol | Hard coral |
| Hard Coral (massive) | HC_massive | Hard coral |
| Helioseris cucullata | HeCuc | Hard coral |
| Isophyllia rigida | IsophRig | Hard coral |
| Isophyllia sinuosa | IsophSin | Hard coral |
| Isophyllia | Isophyllia | Hard coral |
| Manicina areolata | MAA | Hard coral |
| Madracis auretenra | MadAure | Hard coral |
| Madracis carmabi | MadCarm | Hard coral |
| Madracis decactis | MadDeca | Hard coral |
| Madracis formosa | MadForm | Hard coral |
| Madracis pharensis | MadPhar | Hard coral |
| Madracis | Madracis | Hard coral |
| Madracis senaria | MadSen | Hard coral |
| Meandrina | MEAN | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Montastraea | Montastr | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Mycetophyllia aliciae | MycetAli | Hard coral |
| Mycetophyllia danaana | MycetDan | Hard coral |
| Mycetophyllia ferox | MycetFer | Hard coral |
| Mycetophyllia lamarckana | MycetLam | Hard coral |
| Mycetophyllia | Mycetophy | Hard coral |
| Oculina diffusa | OCD | Hard coral |
| Oculina | Oculina | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Orbicella | Orbicella | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites branneri | PorBran | Hard coral |
| Porites colonensis | PORCOL | Hard coral |
| Porites divaricata | PorDiv | Hard coral |
| Porites furcata | PorFurc | Hard coral |
| Porites | Porites | Hard coral |
| Porites porites | PorPor | Hard coral |
| Pseudodiploria | PSEU | Hard coral |
| Pseudodiploria clivosa | PseuCliv | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Scolymia cubensis | SCOCUB | Hard coral |
| Scolymia | SCOL | Hard coral |
| Scolymia lacera | SCOLA | Hard coral |
| Siderastrea | Siderastr | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Solenastrea hyades | SOL | Hard coral |
| Solenastrea bournoni | SOLBOU | Hard coral |
| Solenastrea | SOLE | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Tubastraea | Tubastraea | Hard coral |
| Tubastraea coccinea | TUBCOC | Hard coral |
| Cliona delitrix | CD | Other Invertebrates |
| Chondrilla caribensis | Chondr car | Other Invertebrates |
| Cliona californiana | CLCA | Other Invertebrates |
| Cliona celata | CLCE | Other Invertebrates |
| Cliona | Clio | Other Invertebrates |
| Cliona spp. | CLION | Other Invertebrates |
| Clionid spp. | CLIONI | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Millepora squarrosa | MIS | Other Invertebrates |
| Soft Coral | SC | Other Invertebrates |
| Sponge: Cliona | SINV_SPO_C | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Cliona sp. | SpongeCLIO | Other Invertebrates |
| Zoanthid | Zoanthid | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Thick Sediment Over Rock | ThkSedRck | Soft Substrate |
| Thin Sediment over Rock | ThnSedRck | Soft Substrate |
| Bare Rock | BARK | Hard Substrate |
| Biofilmed Rock | BFlmRck | Hard Substrate |
| Excavating Bite Scar | BiteScar | Hard Substrate |
| Dead coral | D_coral | Hard Substrate |
| Lightly Biofilmed Rock | LBFlmRck | Hard Substrate |
| Coral:Rock | Rc | Hard Substrate |
| Rock Crustose Coralline Algae | RCCA | Hard Substrate |
| Rock_Pavement | RckPav | Hard Substrate |
| Rock Turf Algae | RCTA | Hard Substrate |
| Rock | Rock | Hard Substrate |
| Substrate: Consolidated (hard) Rock | SCRO | Hard Substrate |
| Smothered Rock | SmRock | Hard Substrate |
| Thin Turf/Biofilm on Rock | TnTrfBFRck | Hard Substrate |
| Very Thin Sediment over Rock | VThnSedRck | Hard Substrate |
| Exposed Rock | ERK | Other |
| Other | O | Other |
| PVC | PVC | Other |
| Rebar Structure | Rebar | Other |
| Reel | Reel | Other |
| Rubble | Rubble | Other |
| TAPE | TAPE | Other |
| Articulated coralline algae | ArtCA | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| EAM: Rock or Substrate | EAM_Sub | Algae |
| Endolithic Algae on Rock | EdLtAlgRck | Algae |
| Green Rock | GrnRck | Algae |
| Halimeda | Halimeda | Algae |
| Macroalgae | MAL | Algae |
| Macroalgae: Laminate: red: peysonnelia | MLRP | Algae |
| Turf algae | Turf | Algae |