| Name | Short Code | Functional Group |
|---|---|---|
| Acropora cervicornis | ACRC | Hard coral |
| Acropora | Acrop | Hard coral |
| Acropora palmata | ACRP | Hard coral |
| Acropora prolifera | ACRPRO | Hard coral |
| Agaricia agaricites | AGAAGA | Hard coral |
| Agaricia fragilis | AGAFRA | Hard coral |
| Agaricia grahamae | AGAGRA | Hard coral |
| Agaricia lamarcki | AGALAM | Hard coral |
| Agaricia/Undaria | AGAR | Hard coral |
| Agaricia tenuifolia | AGT | Hard coral |
| Agaricia undata | AGU | Hard coral |
| Agaricia humilis | AH | Hard coral |
| Corals: Stony corals: Digitate | CDIG | Hard coral |
| Hard Coral (encrusting) | CEN | Hard coral |
| Hard Coral (foliose) | CFOL | Hard coral |
| Dichocoenia stokesi | CIST | Hard coral |
| Cladocora arbuscula | CLAABR | Hard coral |
| Hard Coral (massive) | CMAS | Hard coral |
| Colpophyllia natans | CON | Hard coral |
| Corals: Stony corals | CSC | Hard coral |
| Dendrogyra cylindrus | DEC | Hard coral |
| Diploria labyrinthiformis | DL | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia fragum | FAF | Hard coral |
| Stylaster roseus | Fire Sros | Hard coral |
| Isophyllia rigida | ISORIG | Hard coral |
| Isophyllia sinuosa | ISOSIN | Hard coral |
| Leptoseris cucullata | LEPCU | Hard coral |
| Manicina areolata | MAA | Hard coral |
| Madracis carmabi | MAC | Hard coral |
| Madracis decactis | MAD | Hard coral |
| Madracis auretenra | MADAUR | Hard coral |
| Madracis | MADR | Hard coral |
| Madracis formosa | MAFO | Hard coral |
| Madracis pharensis | MAP | Hard coral |
| Montastraea cavernosa | MCAV | Hard coral |
| Meandrina | MEAN | Hard coral |
| Meandrina jacksoni | MEANJ | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastraea | Monta | Hard coral |
| Madracis senaria | MSen | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Mycetophyllia aliciae | MYCALI | Hard coral |
| Mycetophyllia | MYCE | Hard coral |
| Mycetophyllia ferox | MYCFER | Hard coral |
| Mycetophyllia danaana | MYD | Hard coral |
| Mycetophyllia lamarckana | MYL | Hard coral |
| Oculina | OCCUL | Hard coral |
| Oculina diffusa | OCD | Hard coral |
| Orbicella annularis | ORBANN | Hard coral |
| Orbicella faveolata | ORBFAV | Hard coral |
| Orbicella franksi | ORBFRA | Hard coral |
| Palythoa sp | Paly | Hard coral |
| Porites astreoides | PAST | Hard coral |
| Porites divaricata | PD | Hard coral |
| Porites digitiform | PDIG | Hard coral |
| Porites furcata | PF | Hard coral |
| Porites porites | POP | Hard coral |
| Porites branneri | PORBRA | Hard coral |
| Porites colonensis | PORCOL | Hard coral |
| Porites | Porit | Hard coral |
| Pseudodiploria clivosa | PSECLI | Hard coral |
| Pseudodiploria strigosa | PSESTR | Hard coral |
| Pseudodiploria | PSEU | Hard coral |
| Scolymia cubensis | SCOCUB | Hard coral |
| Scolymia | SCOL | Hard coral |
| Scolymia lacera | SCOLA | Hard coral |
| Siderastrea | SID | Hard coral |
| Siderastrea radians | SIDRAD | Hard coral |
| Solenastrea hyades | SOL | Hard coral |
| Solenastrea bournoni | SOLBOU | Hard coral |
| Solenastrea | SOLE | Hard coral |
| Siderastrea siderea | SSID | Hard coral |
| Stephanocoenia intersepta | STEINT | Hard coral |
| Anemone, unidentified | ANUN | Other Invertebrates |
| Briareum asbestinum | BRIASB | Other Invertebrates |
| Chondrilla spp. | CHON | Other Invertebrates |
| Cliona spp. | CLION | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Erythropodium caribaeorum | ERYCAR | Other Invertebrates |
| Sea fans/plumes | GORG | Other Invertebrates |
| Gorgoniidae | GORGO | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Millepora | Mille | Other Invertebrates |
| Millepora squarrosa | MIS | Other Invertebrates |
| Other sessile invertebrates | OTH-SINV | Other Invertebrates |
| Sponges:crusts | SCR | Other Invertebrates |
| Sponges: Hollow forms :Tubes and chimneys | SHTC | Other Invertebrates |
| Sponge (massive) | SpMass | Other Invertebrates |
| Sponge | Sponge | Other Invertebrates |
| Tube or Rod Sponge | SPTU | Other Invertebrates |
| Vase sponge | SPvase | Other Invertebrates |
| Tunicate | Tnce | Other Invertebrates |
| Trididemnum spp. | TRIDI | Other Invertebrates |
| Zoanthid | ZOAN | Other Invertebrates |
| Sand | Sand | Soft Substrate |
| Sediment | Sediment | Soft Substrate |
| Dead coral | Dead | Hard Substrate |
| Rock | Rock | Hard Substrate |
| Rubble | SOFT_RUBB | Other |
| Amphiroa sp. | Amphi | Algae |
| Asparagopsis taxiformis | ASPAR | Algae |
| Avrainvillea | AVRA | Algae |
| Brown fleshy algae | BrFlesAlg | Algae |
| Caulerpa | Caul | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Codium | Cod | Algae |
| Dictyota | Dicsp | Algae |
| Algae (fleshy) | FALG | Algae |
| Galaxaura | GALA | Algae |
| Green fleshy algae | GFA | Algae |
| Halimeda | Hali | Algae |
| Jania rubens | Jan | Algae |
| Lobophora | Lobph | Algae |
| Macroalgae: Articulated calcareous: red | MAACR | Algae |
| Macroalgae | Macro | Algae |
| Large visible globuoles (e.g. Valonia ssp. an | MA_GLOB_Al | Algae |
| Microalgae: cyanobacteria | MICRO_A | Algae |
| Padina | Pad | Algae |
| Penicillus spp. | PENCIL | Algae |
| Red fleshy algae | RFA | Algae |
| Sargassum | Sarg | Algae |
| Stypopodium sp. | Styp | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | Turf_algae | Algae |
| Turf and sand | Turfsa | Algae |
| Udotea cyathiformis | UdoCya | Algae |
| Ventricaria sp. | Vent | Algae |
| Seagrass | Seagrass | Seagrass |