| Name | Short Code | Functional Group |
|---|---|---|
| Acanthastrea | Acanth | Hard coral |
| Acropora cervicornis | AcrCerv | Hard coral |
| Acropora | Acropora | Hard coral |
| Acropora palmata | AcrPalm | Hard coral |
| Acropora prolifera | AcrPro | Hard coral |
| Agaricia agaricites | AgAga | Hard coral |
| Agaricia | Agaricia | Hard coral |
| Agaricia grahamae | AgGra | Hard coral |
| Agaricia humilis | AgHum | Hard coral |
| Agaricia lamarcki | AgLam | Hard coral |
| Alveopora | Alveopora | Hard coral |
| Astrea | Astrea | Hard coral |
| Astreopora | Astreo | Hard coral |
| Colpophyllia breviserialis | COB | Hard coral |
| Colpophylia | colpo | Hard coral |
| Colpophyllia natans | CoNat | Hard coral |
| Coscinaraea | Cosci | Hard coral |
| Ctenactis | Ctena | Hard coral |
| Cycloseris | Cyclo | Hard coral |
| Cyphastrea | Cypha | Hard coral |
| Dendrogyra cylindrus | DenCyl | Hard coral |
| Dichocoenia | dichoco | Hard coral |
| Dichocoenia stokesi | Dicho_stok | Hard coral |
| Diploria labyrinthiformis | DiplLab | Hard coral |
| Diploastrea | Diplo | Hard coral |
| Diploria spp | Diploria | Hard coral |
| Dipsastraea | Dipsa | Hard coral |
| Echinophyllia | Echinophyl | Hard coral |
| Echinopora | Echinopora | Hard coral |
| Eusmilia fastigiata | EFAS | Hard coral |
| Favia | fav | Hard coral |
| Favites | Favites | Hard coral |
| Stylaster roseus | Fire Sros | Hard coral |
| Fungia | Fungia | Hard coral |
| Galaxea | Galaxea | Hard coral |
| Gardineroseris | Gardineros | Hard coral |
| Goniastrea | Goniastrea | Hard coral |
| Goniopora | Goniopora | Hard coral |
| Halomitra | Hal | Hard coral |
| Helioseris cucullata | HeCuc | Hard coral |
| Herpolitha | Herpo | Hard coral |
| Hydnophora | Hydno | Hard coral |
| Isophyllia rigida | IsophRig | Hard coral |
| Isophyllia sinuosa | IsophSin | Hard coral |
| Isophyllia | Isophyllia | Hard coral |
| Isopora | Isopora | Hard coral |
| Leptastrea | Lepta | Hard coral |
| Leptoria | Leptoria | Hard coral |
| Leptoseris | Leptoseris | Hard coral |
| Lobophyllia | Lobophyl | Hard coral |
| Manicina areolata | MAA | Hard coral |
| Madracis carmabi | MadCarm | Hard coral |
| Madracis decactis | MadDeca | Hard coral |
| Madracis pharensis | MadPhar | Hard coral |
| Madracis | Madracis | Hard coral |
| Madracis senaria | MadSen | Hard coral |
| Madracis mirabilis | MAMI | Hard coral |
| Merulina | Merulina | Hard coral |
| Meandrina meandrites | MM | Hard coral |
| Montastraea cavernosa | MontaCav | Hard coral |
| Montastraea | Montastr | Hard coral |
| Montipora | Monti | Hard coral |
| Mussa angulosa | MUSANG | Hard coral |
| Mycedium | Myc | Hard coral |
| Mycetophyllia aliciae | MycetAli | Hard coral |
| Mycetophyllia ferox | MycetFer | Hard coral |
| Mycetophyllia | Mycetophy | Hard coral |
| Orbicella annularis | OrbAnn | Hard coral |
| Orbicella faveolata | OrbFav | Hard coral |
| Orbicella franksi | OrbFrank | Hard coral |
| Orbicella | Orbicella | Hard coral |
| Other hard coral | OTH-HC | Hard coral |
| Oulophyllia | Ouloph | Hard coral |
| Oxypora | Oxyp | Hard coral |
| Pachyseris | Pachyseris | Hard coral |
| Pavona | Pavona | Hard coral |
| Platygyra | Platy | Hard coral |
| Pocillopora | Pocill | Hard coral |
| Porites astreoides | PorAstr | Hard coral |
| Porites branneri | PorBran | Hard coral |
| Porites divaricata | PorDiv | Hard coral |
| Porites | Porites | Hard coral |
| Porites porites | PorPor | Hard coral |
| Psammocora | Psammo | Hard coral |
| Pseudodiploria clivosa | PseuCliv | Hard coral |
| Pseudodiploria strigosa | PseuStrig | Hard coral |
| Porites superfusa | P-SUPER | Hard coral |
| Sandolitha | Sando | Hard coral |
| Scolymia | SCOL | Hard coral |
| Scolymia lacera | SCOLA | Hard coral |
| Seriatopora | Seriatop | Hard coral |
| Siderastrea | Siderastr | Hard coral |
| Siderastrea radians | SidRad | Hard coral |
| Siderastrea siderea | SidSid | Hard coral |
| Stephanocoenia intersepta | StephInt | Hard coral |
| Stylocoeniella | Styloc | Hard coral |
| Stylophora | Styloph | Hard coral |
| Symphyllia | Symph | Hard coral |
| Tubastrea | Tubastrea | Hard coral |
| Turbinaria (coral) | Turbinaria | Hard coral |
| Desmapsama sp. | 12345 | Other Invertebrates |
| Anemone | Anemone | Other Invertebrates |
| Antipatharia | Ant | Other Invertebrates |
| Agelas | A.O | Other Invertebrates |
| Aplysina spp. | AP sp | Other Invertebrates |
| Ascidian | ASCD | Other Invertebrates |
| Branching Gorgonian | BrGorg | Other Invertebrates |
| Briareum asbestinum | BRIASB | Other Invertebrates |
| Bryozoan | bryozoan | Other Invertebrates |
| Chondrilla spp. | CHON | Other Invertebrates |
| Clionid spp. | CLIONI | Other Invertebrates |
| Corallimorpharia | Collimorph | Other Invertebrates |
| Encrusting sponge | ENSP | Other Invertebrates |
| Erythropodium | erythro | Other Invertebrates |
| Eunicea spp. | EUNSPP | Other Invertebrates |
| Tridacna: Giant clam | GiCl | Other Invertebrates |
| Briareum | GORG-BRI | Other Invertebrates |
| Gorgoniidae | GORGONII | Other Invertebrates |
| Heliopora | Heliop | Other Invertebrates |
| Helioseris | helios | Other Invertebrates |
| Holothuroidea | HOL | Other Invertebrates |
| Hydroid | Hydra | Other Invertebrates |
| Hydrozoa | HZ | Other Invertebrates |
| Ircinia sp. | IRCINIA | Other Invertebrates |
| Leather Coral | LC | Other Invertebrates |
| Millepora alcicornis | MILA | Other Invertebrates |
| Millepora complanata | MILC | Other Invertebrates |
| Millepora | Millepora | Other Invertebrates |
| Millepora striata | MILS | Other Invertebrates |
| Millepora squarrosa | MIS | Other Invertebrates |
| Muriceopsis spp. | MURISPP | Other Invertebrates |
| Muricea spp. | MURSPP | Other Invertebrates |
| Niphates sp | Niph | Other Invertebrates |
| Niphates erecta | Niphates | Other Invertebrates |
| Other invertebrate | Other Inv | Other Invertebrates |
| Pachyclavularia | Pachcla | Other Invertebrates |
| Palythoa | PALYTHO | Other Invertebrates |
| Palythoa caribaeorum | PCAR | Other Invertebrates |
| Plakortis | PLAK | Other Invertebrates |
| Plexaura spp. | PLESPP | Other Invertebrates |
| Plexaurella spp. | PLEXSPP | Other Invertebrates |
| Pseudoplexaura spp. | PSESPP | Other Invertebrates |
| Pseudopterogorgia | Pseudopter | Other Invertebrates |
| Pterogorgia | Pterogorg | Other Invertebrates |
| Sponge | SP | Other Invertebrates |
| Stylaster Sp. | Stylas | Other Invertebrates |
| Trididemnum spp. | TRIDI | Other Invertebrates |
| Tunicate | Tunicate | Other Invertebrates |
| Verongula sp. | Ver | Other Invertebrates |
| Zoanthid | Zoanthid | Other Invertebrates |
| Zooanthid | Zoo | Other Invertebrates |
| Green diplosoma | g_diplo | Soft Substrate |
| Mud | Mud | Soft Substrate |
| Sand | Sand | Soft Substrate |
| Basalt | Basalt | Hard Substrate |
| limestone_stable_substrate | limess | Hard Substrate |
| Black Fungus Disease (BFD) | BFD | Other |
| Calcium Carbonate | Calc | Other |
| Cyanobacteria | CYANOB | Other |
| Schizothrix | Cyan red | Other |
| Halophilia | halphil | Other |
| Hannia | hannia | Other |
| Other | O | Other |
| Acetabularia calyculus | A.cal | Algae |
| Acetabularia spp. | ACET | Algae |
| Acetabularia crenulata | A.cre | Algae |
| Other Algae | ALG_OTH | Algae |
| Amphiroa sp. | Amphi | Algae |
| CREP-T3a Amansia spp | *AMSP | Algae |
| Asparagopsis | Asparago | Algae |
| Avrainvillea | Avrainvil | Algae |
| Black crust | BlackCru | Algae |
| Branching and calcareous algae | BRAN-CALC | Algae |
| Brown fleshy algae | BrFlesAlg | Algae |
| Brillo Spike Pad | BSP | Algae |
| Calcareous algae | CALG | Algae |
| Caulerpa | Caulerpa | Algae |
| Caulerpa racemosa | CauRac | Algae |
| Caulerpa serrulata | Cau_ser | Algae |
| CCA (crustose coralline algae) | CCA | Algae |
| Chlorodesmis sp. | Chlor | Algae |
| Codium | Cod | Algae |
| Dictyosphaeria cavernosa | DCav | Algae |
| Dictyopteris | Dictyopter | Algae |
| Dictyota | Dictyota | Algae |
| Dictyosphaeria versluysii | DVers | Algae |
| Galaxaura | Galaxaura | Algae |
| Green fleshy algae | GFA | Algae |
| CRED-Green macroalgae | *GRMA | Algae |
| Halimeda copiosa | Hal.cop | Algae |
| Halimeda | Halimeda | Algae |
| Hypnea | Hyp | Algae |
| Jania | Jania | Algae |
| Liagora | LIA | Algae |
| Lobophora | Lobophora | Algae |
| Lobophora variegata | LopVar | Algae |
| Macroalgae: Articulated calcareous: red | MAACR | Algae |
| Macroalgae: Encrusting: brown | MAENB | Algae |
| Macroalgae: Encrusting: green | MAENG | Algae |
| Macroalgae:Encrusting:Red:Calcareous:Crustose | MERCC | Algae |
| Microdictyon | Microdicty | Algae |
| Neomeris | Neomeris | Algae |
| Padina boergesenii | Pad.boe | Algae |
| Padina | Padina | Algae |
| Padina jamaicensis | Pad.jam | Algae |
| Palmophyllum crassum | Palmophyl_ | Algae |
| Penicillus spp. | PENCIL | Algae |
| Peyssonnelia | Peysson | Algae |
| Red fleshy algae | RFA | Algae |
| Rhipocephalus phoenix | Rhipo.phoe | Algae |
| Rhipilia spp. | Rhp | Algae |
| Sargassum | Sargassum | Algae |
| Sargassum hystrix | SarHys | Algae |
| Sick CCA | SCCA | Algae |
| Sargassum fluitans | S-flu | Algae |
| Stypopodium sp. | Styp | Algae |
| Trichogloea | tricho | Algae |
| Turbinaria (algae) | Turbin | Algae |
| Turf algae | Turf | Algae |
| Tydemania spp. | Tyd | Algae |
| Udotea spp. | UDOT | Algae |
| Ulva | Ulva | Algae |
| Valonia spp. | Valspp | Algae |
| Valonia ventricosa | Vavent | Algae |
| Wrangelia penicillata | Wrangel pe | Algae |
| Halodule wrightii | HalodWri | Seagrass |
| Seagrass | Seagrass | Seagrass |
| Syringodium | Syringodiu | Seagrass |
| Thalassia testudinum | ThalTes | Seagrass |